PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g09140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 72aa    MW: 7944.85 Da    PI: 9.3813
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g09140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP49.51.6e-151463883
              TCP 38 eLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83
                     +LGfdk+s+t+eWL++++k+aikel+++++s++se  a+s sss++
  Vradi01g09140.1  1 MLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSD 46
                     8***************************777775542222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136917.548125IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-13153IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MLGFDKASNT LEWLFNKSKR AIKELARSKN STNSEEGAKS FSSSSDSVSL QFSGLQIFGK  60
SWEECTNPRL H*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150448e-68AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151756.14e-21hypothetical protein PHAVU_004G072100g
TrEMBLV7C3944e-21V7C394_PHAVU; Uncharacterized protein
STRINGGLYMA13G07475.16e-18(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-10TCP family protein